This paper investigates the effect of boost pressure and intake temperature on the auto-ignition of fuels with a wide range of properties. The fuels used in this investigation are ULSD (CN 45), FT-SPK (CN 61) and two blends of JP-8 (with CN 25 and 49). Detailed analysis of in-cylinder pressure and rate of heat release traces are made to correlate the effect of intake pressure and injection strategy on the events immediately following start of injection leading to combustion. A CFD model is applied to track the effect of intake pressure and injection strategy on the formation of different chemical species and study their role and contribution in the auto-ignition reactions. Results from a previous investigation on the effect of intake temperature on auto-ignition of these fuels are compared with the results of this investigation.