Blower is one of the main noise sources of fuel cell vehicle. In this paper, a narrowband active noise control (ANC) model is established based on adaptive notch filter (ANF) to control the high-frequency noise produced by the blower. Under transient conditions, in order to reduce the frequency mismatch (FM) of ANC for blower, a new Frequency Mismatch Filtered-Error Least Mean Square algorithm (FM-FELMS) is proposed to attenuate blower noise under transient conditions. According to the theoretical analysis and simulation, the proposed algorithm has an excellent noise reduction performance at relatively high blower speed. While for the low speed working condition, the Normalized Least Mean Square (NLMS) algorithm is applied to attenuate noise. The two algorithms could be jointly utilized to control the blower noise actively.